[gt-users] python tests and splitfasta

[Gordon Gremme]

On Tue, Apr 21, 2009 at 6:14 PM, Gordon Gremme <gremme at gmail.com> wrote:
>>>> hi, i'm attaching a patch to update the python tests for recent change
>>>> to use create_new() rather than __init__()
>>>> i also added a property for attribs as i think that's convenient.
>>>
>>> thanks, but it leads to a test failure on my machine (Darwin i386):
>>>
>>> 488: gtpython: AnnotationSketch bindings (FeatureNode(Iterator)) : failed
>>>     [ problem: unexpected return code: 2 != 0
>>>       in: /Users/gordon/work/genometools/testsuite/stest_testsuite/test488 ]
>>>
>>> Any ideas?
>>>
>>
>> that fails for me without the patch as well. i can't see what's going on.
>
> I just committed the patch, thanks.
> The failure seems to be related to the reference counting we do on the
> C side, I have to think some more about a possible solution.
>
> Gordon
>

The problem was related to the reference counting for FeatureNodes and
it is now fixed (in genometools-unstable and the soon to be released
version 1.3.2).

Gordon