[gt-users] some questions

Giorgio Gonnella ggonnell at yahoo.it
Sat Aug 8 16:40:08 CEST 2009


My first implementation of "gt simreads" is ready. 

Please have a look at my code if you have any time for that!

You find it in my github fork of genometools, simreads branch: 
http://github.com/ggonnella/genometools/tree/simreads

Usage: 
gt simreads -len 200 -num 100 inputfile.fas
or
gt simreads -minlen 200 -maxlen 250 -num 100 inputfile.fas

Bye. 
Giorgio

PS:
I have a known bug, where the input sequence is given in STDIN: 
gt simreads -minlen 200 -maxlen 250 -num 100 < inputfile.fas
(this is currently not working)



      


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