[gt-users] gt-users Digest, Vol 13, Issue 7

[Nicolas Allias]

Hi all,

First, thanks Sascha for your answers :-)
>> Oh, another question: does anyone has the code of this wonderful picture 
>> http://genometools.org/images/example_ct.png ?
>> I'm more interested by the use of CustomTrack.
>>     
> If you prefer Ruby or Python over C, there are also custom track
> examples in the gtruby/annotationsketch and gtpython/gt/annotationsketch
> directories.
>   
I'd like to test the new version, so I took the genometools-unstable 
last modified the

	2009-Nov-27 11:41:39

After having installed it, I run a test with a personal gff3 
hand-writted... and have the same result, with the 5' 3' on the axis.

All were going well up to here : if I modify the file style as you 
proposed, but the notations still be 5' 3'
> config =
> {
>   ...
>   format =
>   {
>     ...
>     unit = "",                -- do not mark any units as 'bp'
>     ruler_left_text = "N",    -- mark left plot side as N terminus
>     ruler_right_text = "C",   -- mark right plot side as C terminus
>     ...
>   },
> }
> ...
So I hoped I made a mistake in the file.style, so I wanted to test my 
file.style with adding
>     submarine      = {red=1.0, green=1.0, blue=0.0, alpha = 1.0},
in the format block. This one is undefined but returned no errors on 
execution. Have you a file.style validator ? Where am I wrong ? I'd like 
to see all that working :-)


Best regards,

Nicolas