[gt-users] [Python]Proteic plot

[Nicolas Allias]

Hi all,

You exactly answered my questions :-)
> Additional key-value pairs which are not required or queried by AnnotationSketch
> are simply ignored. Errors are reported only when Lua has a problem
> parsing your script, e.g. in case of syntax errors.
>
> I guess your problem will be gone as soon as you have the most current
> version from the git repository.
So I have another one : is there any parameter to force display of the 
whole sequence ?
    I use the annotation sketch for the proteic alignment and use 
CustomTrack for plotting a graph of alignment coverage.
It happens that at the edges of the query protein I have nothing to 
display, but the is some crucial information in the CutomTrack's graph. 
Your algorithm truncates such edges (because there is no sequence, so no 
box or line) and the only way I can constraint it is by adding a line in 
the gff3 requiring the display of the whole sequence.

<whole        query         sequence >

<part conserved > <  deleted   part  >
 ______    _____
[______]  [_____]

|
|     graphical data all the long
|_____________________________________