[gt-users] FASTA stream input implemented?

Gordon Gremme gremme at gmail.com
Thu Feb 19 16:58:06 CET 2009


> I am very sorry, how to contruct a GtSequenceRegion? I get a sequence,
> len, and desc from fasta_in_stream_next()
> but I don't know where to put them ...

Sorry, my mistake. I meant a GtSequenceNode, you can construct it via
gt_sequence_node_new() (see the API documentation for details).


> I don't need the "GTQueue genome_node_buffer" any more in my struct
> GtFASTAInStream, right?

Correct.

Gordon


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