[gt-users] Creating my own images

shafeeq rim hsa_rim at yahoo.co.in
Mon Feb 23 10:21:05 CET 2009


Hi All,

I recently started using gt tool for genome visualization. I have a few questions:-

1) How can I can create my own symbols separately for each feature like:- separate symbols for exon and different symbol for intron ... etc etc...

2) When I am plotting the annotation files of like full chromosome 21 I am getting blank picture.
3) Even for a bit larger files I am getting a message in PNG file (Blocks not shown . Exceeded limit)
4) If I want to use a Mysql database instead of the parser how can I do that ?

How can I deal with all this ?

I may require a whole picture  in some case.

Thanks in advance 
Shafeeq



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