[gt-users] dupfeat, interfeat and mergefeat tool (was: Re: A series of questions regarding GenomeTools C and its Python interface)

[Gordon Gremme]

On Fri, May 1, 2009 at 8:03 PM, Brent Pedersen <bpederse at gmail.com> wrote:
> On Thu, Apr 30, 2009 at 12:59 PM, Gordon Gremme <gremme at gmail.com> wrote:
>> Hi,
>>
>> I just added three new tools to GenomeTools (dupfeat, interfeat and
>> mergefeat) which implement the functionality discussed below. The
>> corresponding streams on the C side are called GtDupFeatureStream,
>> GtInterFeatureStream and GtMergeFeatureStream. I tested a little bit,
>> but I will add some more tests soon and try it out on the example data
>> provided by Mauricio.
>>
>> I haven't had time to work on the Python bindings yet. Any volunteers?
>> Shouldn't be too hard.
>>
>
> cool. this is useful!
> i can add these. should i add a new python file for each? or put them
> into stream_ops.py or
> similar?

I would put them in separate files to retain the one-to-one mapping to
the C files.

Thanks,

Gordon