[gt-users] dupfeat, interfeat and mergefeat tool (was: Re: A series of questions regarding GenomeTools C and its Python interface)

[Brent Pedersen]

On Mon, May 4, 2009 at 2:35 AM, Gordon Gremme <gremme at gmail.com> wrote:
> On Fri, May 1, 2009 at 8:03 PM, Brent Pedersen <bpederse at gmail.com> wrote:
>> On Thu, Apr 30, 2009 at 12:59 PM, Gordon Gremme <gremme at gmail.com> wrote:
>>> Hi,
>>>
>>> I just added three new tools to GenomeTools (dupfeat, interfeat and
>>> mergefeat) which implement the functionality discussed below. The
>>> corresponding streams on the C side are called GtDupFeatureStream,
>>> GtInterFeatureStream and GtMergeFeatureStream. I tested a little bit,
>>> but I will add some more tests soon and try it out on the example data
>>> provided by Mauricio.
>>>
>>> I haven't had time to work on the Python bindings yet. Any volunteers?
>>> Shouldn't be too hard.
>>>
>>
>> cool. this is useful!
>> i can add these. should i add a new python file for each? or put them
>> into stream_ops.py or
>> similar?
>
> I would put them in separate files to retain the one-to-one mapping to
> the C files.
>
> Thanks,
>
> Gordon
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hi, patch attached. let me know if any changes are needed.
the tests are kinda hacky, but do the trick.
-b
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