[gt-users] dupfeat, interfeat and mergefeat tool (was: Re: A series of questions regarding GenomeTools C and its Python interface)

Brent Pedersen bpederse at gmail.com
Wed May 6 17:28:28 CEST 2009


On Wed, May 6, 2009 at 7:38 AM, Gordon Gremme <gremme at gmail.com> wrote:
>>> i call the tests like:
>>> path/to/genometools/gtpython$ PYTHONPATH=. python tests/__init__.py
>>>
>>> i didnt hook it into the testsuite.rb.
>>> i guess it should just run that command and check for 'OK' as the last line.
>>
>> does that seem reasonable? if so i'll submit another patch.
>
> Seems like a good idea.
>
>
>> does testsuite.rb have a simple means to check for that?
>
> grep $last_stdout, "OK"
>
> could be used to grep the complete output for "OK". If the python
> tests do not issue other OK's that should do.
>
> Gordon
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>

hi, updated the patch (attached) to use my name and add the python
unittests to the testsuite.
-b
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