[gt-users] warnings

[Brent Pedersen]

hi, how can i turn off warnings from within python.
when i do:

import gt
f = gt.FeatureIndexMemory()
f.add_gff3file("some.gff")

it gives the warnings about:
warning: seqid "2" on line 2 in file "some.gff" has not been
previously introduced with a "##sequence-region" line, create such a
line automatically


i also made the change pasted below to stop problems (segfaults) i was
having when running under modwsgi/apache:




diff --git a/gtpython/gt/annotationsketch/feature_index.py
b/gtpython/gt/annotationsketch/feature_index.py
index 9c7d8a8..998a12a 100644
--- a/gtpython/gt/annotationsketch/feature_index.py
+++ b/gtpython/gt/annotationsketch/feature_index.py
@@ -33,7 +33,8 @@ class FeatureIndex:

     def __del__(self):
         try:
-            gtlib.gt_feature_index_delete(self.fi)
+            self.fi
+            gtlib.gt_feature_index_delete(self)
         except AttributeError:
             pass

@@ -103,6 +104,9 @@ class FeatureIndex:
         gtlib.gt_feature_index_get_features_for_seqid.restype = c_void_p
         gtlib.gt_feature_index_add_gff3file.argtypes = [c_void_p,
                 c_char_p, Error]
+        gtlib.gt_feature_index_delete.argtypes = [FeatureIndex]
+        gtlib.gt_feature_index_delete.restype = c_void_p
+
         gtlib.gt_feature_index_get_first_seqid.restype = c_char_p
         gtlib.gt_feature_index_get_seqids.restype = c_void_p
         gtlib.gt_feature_index_has_seqid.argtypes = [c_void_p, c_char_p]